PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239527.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 233aa    MW: 26289.5 Da    PI: 8.4734
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239527.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.74.7e-49141381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF+Ptdeelv +yL+ kv + +l++ ++i+ev+++ ++PwdLp      e+e yfFs++++ky++g+r+nr+t+sgyWkatg+dk+++s+
  XP_008239527.1  14 LPPGFRFQPTDEELVFQYLRCKVFSCPLPA-SIIPEVNVCMYDPWDLPGD---LEQERYFFSNKESKYRNGSRANRVTSSGYWKATGTDKKIVSS 104
                     79****************************.89***************54...46799**********************************998 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ vg kktLvfy+g+ap+g +tdWvmhey l
  XP_008239527.1 105 rRNHIVGKKKTLVFYRGKAPNGCRTDWVMHEYCL 138
                     67778***************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-578168IPR003441NAC domain
PROSITE profilePS5100554.93914168IPR003441NAC domain
PfamPF023651.0E-2415138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDKFNFVRNG MIRLPPGFRF QPTDEELVFQ YLRCKVFSCP LPASIIPEVN VCMYDPWDLP  60
GDLEQERYFF SNKESKYRNG SRANRVTSSG YWKATGTDKK IVSSRRNHIV GKKKTLVFYR  120
GKAPNGCRTD WVMHEYCLVD AETTTSINTA ENALNQKENW VLCRIFSKKR SCKTDDEKGI  180
RVNNAEMVHA PQTNNNQSPV SSSSSCSSSS GITEVTSSSG AGDEEEISGC TKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B2e-471217315170NAC domain-containing protein 19
4dul_A2e-471217315170NAC domain-containing protein 19
1ut7_B2e-471217315170NO APICAL MERISTEM PROTEIN
1ut7_A2e-471217315170NO APICAL MERISTEM PROTEIN
1ut4_B2e-471217315170NO APICAL MERISTEM PROTEIN
1ut4_A2e-471217315170NO APICAL MERISTEM PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239527.11e-176PREDICTED: NAC transcription factor 25
SwissprotQ9FY935e-78NAC83_ARATH; NAC domain-containing protein 83
TrEMBLM5WSR91e-164M5WSR9_PRUPE; Uncharacterized protein
STRINGVIT_01s0146g00280.t013e-91(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-78NAC domain containing protein 83